1 /**
2  * UGENE - Integrated Bioinformatics Tools.
3  * Copyright (C) 2008-2021 UniPro <ugene@unipro.ru>
4  * http://ugene.net
5  *
6  * This program is free software; you can redistribute it and/or
7  * modify it under the terms of the GNU General Public License
8  * as published by the Free Software Foundation; either version 2
9  * of the License, or (at your option) any later version.
10  *
11  * This program is distributed in the hope that it will be useful,
12  * but WITHOUT ANY WARRANTY; without even the implied warranty of
13  * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
14  * GNU General Public License for more details.
15  *
16  * You should have received a copy of the GNU General Public License
17  * along with this program; if not, write to the Free Software
18  * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,
19  * MA 02110-1301, USA.
20  */
21 
22 #ifndef _U2_BEDTOOLS_SUPPORT_TASK_H_
23 #define _U2_BEDTOOLS_SUPPORT_TASK_H_
24 
25 #include <U2Formats/ConvertFileTask.h>
26 
27 namespace U2 {
28 
29 class BamBedConversionTask : public ConvertFileTask {
30 public:
31     BamBedConversionTask(const GUrl &sourceURL, const QString &detectedFormat, const QString &targetFormat, const QString &dir);
32 
33 protected:
34     void prepare();
35     void run();
36 };
37 
38 class BAMBEDConvertFactory : public ConvertFileFactory {
39 public:
40     virtual bool isCustomFormatTask(const QString &detectedFormat, const QString &targetFormat);
getTask(const GUrl & sourceURL,const QString & detectedFormat,const QString & targetFormat,const QString & dir)41     virtual ConvertFileTask *getTask(const GUrl &sourceURL, const QString &detectedFormat, const QString &targetFormat, const QString &dir) {
42         return new BamBedConversionTask(sourceURL, detectedFormat, targetFormat, dir);
43     }
44 };
45 
46 }    // namespace U2
47 
48 #endif    // _U2_BEDTOOLS_SUPPORT_TASK_H_
49