1 /** 2 * UGENE - Integrated Bioinformatics Tools. 3 * Copyright (C) 2008-2021 UniPro <ugene@unipro.ru> 4 * http://ugene.net 5 * 6 * This program is free software; you can redistribute it and/or 7 * modify it under the terms of the GNU General Public License 8 * as published by the Free Software Foundation; either version 2 9 * of the License, or (at your option) any later version. 10 * 11 * This program is distributed in the hope that it will be useful, 12 * but WITHOUT ANY WARRANTY; without even the implied warranty of 13 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the 14 * GNU General Public License for more details. 15 * 16 * You should have received a copy of the GNU General Public License 17 * along with this program; if not, write to the Free Software 18 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, 19 * MA 02110-1301, USA. 20 */ 21 22 #ifndef _U2_BEDTOOLS_SUPPORT_TASK_H_ 23 #define _U2_BEDTOOLS_SUPPORT_TASK_H_ 24 25 #include <U2Formats/ConvertFileTask.h> 26 27 namespace U2 { 28 29 class BamBedConversionTask : public ConvertFileTask { 30 public: 31 BamBedConversionTask(const GUrl &sourceURL, const QString &detectedFormat, const QString &targetFormat, const QString &dir); 32 33 protected: 34 void prepare(); 35 void run(); 36 }; 37 38 class BAMBEDConvertFactory : public ConvertFileFactory { 39 public: 40 virtual bool isCustomFormatTask(const QString &detectedFormat, const QString &targetFormat); getTask(const GUrl & sourceURL,const QString & detectedFormat,const QString & targetFormat,const QString & dir)41 virtual ConvertFileTask *getTask(const GUrl &sourceURL, const QString &detectedFormat, const QString &targetFormat, const QString &dir) { 42 return new BamBedConversionTask(sourceURL, detectedFormat, targetFormat, dir); 43 } 44 }; 45 46 } // namespace U2 47 48 #endif // _U2_BEDTOOLS_SUPPORT_TASK_H_ 49