1 /** 2 * UGENE - Integrated Bioinformatics Tools. 3 * Copyright (C) 2008-2021 UniPro <ugene@unipro.ru> 4 * http://ugene.net 5 * 6 * This program is free software; you can redistribute it and/or 7 * modify it under the terms of the GNU General Public License 8 * as published by the Free Software Foundation; either version 2 9 * of the License, or (at your option) any later version. 10 * 11 * This program is distributed in the hope that it will be useful, 12 * but WITHOUT ANY WARRANTY; without even the implied warranty of 13 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the 14 * GNU General Public License for more details. 15 * 16 * You should have received a copy of the GNU General Public License 17 * along with this program; if not, write to the Free Software 18 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, 19 * MA 02110-1301, USA. 20 */ 21 22 #ifndef _U2_RPS_BLAST_SUPPORT_TASK_H_ 23 #define _U2_RPS_BLAST_SUPPORT_TASK_H_ 24 25 #include <U2Algorithm/CDSearchTaskFactory.h> 26 27 #include "BlastPlusSupportCommonTask.h" 28 29 namespace U2 { 30 31 class RPSBlastSupportTask : public BlastPlusSupportCommonTask { 32 Q_OBJECT 33 public: RPSBlastSupportTask(const BlastTaskSettings & settings)34 RPSBlastSupportTask(const BlastTaskSettings &settings) 35 : BlastPlusSupportCommonTask(settings) { 36 } 37 virtual ExternalToolRunTask *createBlastPlusTask(); 38 }; 39 40 class LocalCDSearch : public CDSearchResultListener { 41 public: 42 LocalCDSearch(const CDSearchSettings &settings); getTask()43 virtual Task *getTask() const { 44 return task; 45 } 46 virtual QList<SharedAnnotationData> getCDSResults() const; 47 48 private: 49 RPSBlastSupportTask *task; 50 }; 51 52 class CDSearchLocalTaskFactory : public CDSearchFactory { 53 public: createCDSearch(const CDSearchSettings & settings)54 virtual CDSearchResultListener *createCDSearch(const CDSearchSettings &settings) const { 55 return new LocalCDSearch(settings); 56 } 57 }; 58 59 } // namespace U2 60 61 #endif 62