1 /**
2  * UGENE - Integrated Bioinformatics Tools.
3  * Copyright (C) 2008-2021 UniPro <ugene@unipro.ru>
4  * http://ugene.net
5  *
6  * This program is free software; you can redistribute it and/or
7  * modify it under the terms of the GNU General Public License
8  * as published by the Free Software Foundation; either version 2
9  * of the License, or (at your option) any later version.
10  *
11  * This program is distributed in the hope that it will be useful,
12  * but WITHOUT ANY WARRANTY; without even the implied warranty of
13  * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
14  * GNU General Public License for more details.
15  *
16  * You should have received a copy of the GNU General Public License
17  * along with this program; if not, write to the Free Software
18  * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,
19  * MA 02110-1301, USA.
20  */
21 
22 #ifndef _U2_RPS_BLAST_SUPPORT_TASK_H_
23 #define _U2_RPS_BLAST_SUPPORT_TASK_H_
24 
25 #include <U2Algorithm/CDSearchTaskFactory.h>
26 
27 #include "BlastPlusSupportCommonTask.h"
28 
29 namespace U2 {
30 
31 class RPSBlastSupportTask : public BlastPlusSupportCommonTask {
32     Q_OBJECT
33 public:
RPSBlastSupportTask(const BlastTaskSettings & settings)34     RPSBlastSupportTask(const BlastTaskSettings &settings)
35         : BlastPlusSupportCommonTask(settings) {
36     }
37     virtual ExternalToolRunTask *createBlastPlusTask();
38 };
39 
40 class LocalCDSearch : public CDSearchResultListener {
41 public:
42     LocalCDSearch(const CDSearchSettings &settings);
getTask()43     virtual Task *getTask() const {
44         return task;
45     }
46     virtual QList<SharedAnnotationData> getCDSResults() const;
47 
48 private:
49     RPSBlastSupportTask *task;
50 };
51 
52 class CDSearchLocalTaskFactory : public CDSearchFactory {
53 public:
createCDSearch(const CDSearchSettings & settings)54     virtual CDSearchResultListener *createCDSearch(const CDSearchSettings &settings) const {
55         return new LocalCDSearch(settings);
56     }
57 };
58 
59 }    // namespace U2
60 
61 #endif
62