1 /**
2 * UGENE - Integrated Bioinformatics Tools.
3 * Copyright (C) 2008-2021 UniPro <ugene@unipro.ru>
4 * http://ugene.net
5 *
6 * This program is free software; you can redistribute it and/or
7 * modify it under the terms of the GNU General Public License
8 * as published by the Free Software Foundation; either version 2
9 * of the License, or (at your option) any later version.
10 *
11 * This program is distributed in the hope that it will be useful,
12 * but WITHOUT ANY WARRANTY; without even the implied warranty of
13 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
14 * GNU General Public License for more details.
15 *
16 * You should have received a copy of the GNU General Public License
17 * along with this program; if not, write to the Free Software
18 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,
19 * MA 02110-1301, USA.
20 */
21
22 #include "ExternalToolUtils.h"
23
24 #include <QFile>
25 #include <QFileInfo>
26 #include <QMessageBox>
27
28 #include <U2Core/AppContext.h>
29 #include <U2Core/DataPathRegistry.h>
30 #include <U2Core/ExternalToolRegistry.h>
31 #include <U2Core/QObjectScopedPointer.h>
32 #include <U2Core/Settings.h>
33 #include <U2Core/U2SafePoints.h>
34
35 #include <U2Gui/AppSettingsGUI.h>
36
37 #include "ExternalToolSupportSettingsController.h"
38
39 namespace U2 {
40
41 const QString ExternalToolUtils::CISTROME_DATA_DIR = "CISTROME_DATA_DIR";
42
checkExtToolsPath(const QStringList & ids)43 void ExternalToolUtils::checkExtToolsPath(const QStringList &ids) {
44 QStringList missingTools;
45 foreach (const QString &id, ids) {
46 ExternalTool *tool = AppContext::getExternalToolRegistry()->getById(id);
47 SAFE_POINT(nullptr != tool, QString("External tool with ID '%1' not found in the registry").arg(id), );
48 if (tool->getPath().isEmpty()) {
49 missingTools << tool->getName();
50 }
51 }
52 if (!missingTools.isEmpty()) {
53 QString mergedNames = missingTools.join(", ");
54
55 QObjectScopedPointer<QMessageBox> msgBox = new QMessageBox;
56 msgBox->setWindowTitle("BLAST: " + QString(mergedNames));
57 msgBox->setText(tr("Paths for the following tools are not selected: %1.").arg(mergedNames));
58 msgBox->setInformativeText(tr("Do you want to select it now?"));
59 msgBox->setStandardButtons(QMessageBox::Yes | QMessageBox::No);
60 msgBox->setDefaultButton(QMessageBox::Yes);
61 const int ret = msgBox->exec();
62 CHECK(!msgBox.isNull(), );
63
64 switch (ret) {
65 case QMessageBox::Yes:
66 AppContext::getAppSettingsGUI()->showSettingsDialog(ExternalToolSupportSettingsPageId);
67 break;
68 case QMessageBox::No:
69 return;
70 default:
71 assert(false);
72 break;
73 }
74 }
75 }
76
addDefaultCistromeDirToSettings()77 void ExternalToolUtils::addDefaultCistromeDirToSettings() {
78 QString cistromeDefaultPath;
79 QString customDataDir = qgetenv("UGENE_DATA_PATH");
80 if (!customDataDir.isEmpty()) {
81 cistromeDefaultPath = QFileInfo(customDataDir + "/cistrome").absoluteFilePath();
82 } else {
83 cistromeDefaultPath = QFileInfo(QString(PATH_PREFIX_DATA) + QString(":") + "cistrome").absoluteFilePath();
84 }
85
86 bool defaultExists = QFile::exists(cistromeDefaultPath);
87 QString savedValue = AppContext::getSettings()->getValue(CISTROME_DATA_DIR).toString();
88
89 bool addNew = savedValue.isEmpty() && defaultExists;
90 bool removeOld = !savedValue.isEmpty() && !QFile::exists(savedValue);
91 bool replaceOld = removeOld && defaultExists;
92
93 if (addNew || replaceOld) {
94 AppContext::getSettings()->setValue(CISTROME_DATA_DIR, cistromeDefaultPath);
95 } else if (removeOld) {
96 AppContext::getSettings()->remove(CISTROME_DATA_DIR);
97 }
98 }
99
addCistromeDataPath(const QString & dataName,const QString & dirName,bool entriesAreFolders)100 void ExternalToolUtils::addCistromeDataPath(const QString &dataName, const QString &dirName, bool entriesAreFolders) {
101 U2DataPathRegistry *dpr = AppContext::getDataPathRegistry();
102 CHECK(nullptr != dpr, );
103
104 const QString dataPath = AppContext::getSettings()->getValue(CISTROME_DATA_DIR).toString() + QDir::separator() + dirName;
105 U2DataPath *dp = new U2DataPath(dataName, dataPath, "", U2DataPath::CutFileExtension | (entriesAreFolders ? U2DataPath::AddOnlyFolders : U2DataPath::None));
106 bool ok = dpr->registerEntry(dp);
107 if (!ok) {
108 delete dp;
109 }
110 }
111
112 } // namespace U2
113