1#!/bin/sh -ex 2 3lines=5000 4 5time bcftools view \ 6 freeze.8.chr22.pass_only.phased.bcf | head -$lines > /dev/null 7 8samples=NWD112649,NWD278543,NWD579469,NWD784564,NWD777183,NWD224967,NWD715103,NWD843745,NWD908814,NWD746546 9time bcftools view --genotype het --exclude-types indels --samples "$samples" \ 10 freeze.8.chr22.pass_only.phased.bcf | head -$lines > /dev/null 11 12time bcftools view --min-ac 2 \ 13 freeze.8.chr22.pass_only.phased.bcf | head -$lines > /dev/null 14 15time bcftools view --exclude-types indels \ 16 freeze.8.chr22.pass_only.phased.bcf | head -$lines > /dev/null 17 18time bcftools view --genotype het \ 19 freeze.8.chr22.pass_only.phased.bcf | head -$lines > /dev/null 20 21time bcftools view --min-ac 2 --exclude-types indels \ 22 freeze.8.chr22.pass_only.phased.bcf | head -$lines > /dev/null 23 24time bcftools view --min-ac 2 --genotype het \ 25 freeze.8.chr22.pass_only.phased.bcf | head -$lines > /dev/null 26 27time bcftools view --exclude-types indels --genotype het \ 28 freeze.8.chr22.pass_only.phased.bcf | head -$lines > /dev/null 29 30time bcftools view --min-ac 2 --exclude-types indels --genotype het \ 31 freeze.8.chr22.pass_only.phased.bcf | head -$lines > /dev/null 32 33