1#!/bin/sh -e 2 3pause() 4{ 5 local junk 6 7 printf "Press return to continue..." 8 read junk 9} 10 11cd .. 12./cave-man-install.sh 13cd Test 14../vcf-split test-all-fields- 1 11 < test.vcf 15../vcf-split --fields chrom,pos,ref,alt,format test-limited-fields- 1 11 < test.vcf 16rm -f *.done 17 18printf "All files should be 12 lines:\n" 19wc -l test-*.vcf 20pause 21 22printf "There should be no differences shown below:\n" 23for col in $(seq 11); do 24 diff test-all-fields-$col.vcf correct-all-fields-$col.vcf 25 diff test-limited-fields-$col.vcf correct-limited-fields-$col.vcf 26done 27rm -f test-*.vcf 28