1% VCFROC(1) vcfroc (vcflib) | vcfroc (VCF statistics)
2% Erik Garrison and vcflib contributors
3
4# NAME
5
6**vcfroc**
7
8# SYNOPSIS
9
10**vcfroc** [options] [<vcf file>]
11
12# DESCRIPTION
13
14Generates a pseudo-ROC curve using sensitivity and specificity estimated against a putative truth set. Thresholding is provided by successive QUAL cutoffs.
15
16
17
18# OPTIONS
19
20```
21
22options:
23    -t, --truth-vcf FILE      use this VCF as ground truth for ROC generation
24    -w, --window-size N       compare records up to this many bp away (default 30)
25    -c, --complex             directly compare complex alleles, don't parse into primitives
26    -r, --reference FILE      FASTA reference file
27
28
29```
30
31
32
33
34
35# EXIT VALUES
36
37**0**
38: Success
39
40**not 0**
41: Failure
42
43# SEE ALSO
44
45
46
47[vcflib](./vcflib.md)(1)
48
49
50
51# OTHER
52
53## Source code
54
55[vcfroc.cpp](https://github.com/vcflib/vcflib/blob/master/src/vcfroc.cpp)
56
57# LICENSE
58
59Copyright 2011-2020 (C) Erik Garrison and vcflib contributors. MIT licensed.
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