| /dports/biology/vt/vt-0.57721/lib/htslib/test/ |
| H A D | test-bcf-sr.c | 89 int i, j, n, nvcf; in main() local
90 char **vcf = hts_readlist(argv[optind], 1, &nvcf); in main()
96 for (i=0; i<nvcf; i++) in main()
135 for (i=0; i<nvcf; i++) in main()
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| H A D | test-bcf-sr.pl | 200 my $nvcf = 1 + int(rand(10));
201 for (my $i=0; $i<$nvcf; $i++)
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| /dports/biology/kallisto/kallisto-0.46.1/ext/htslib/test/ |
| H A D | test-bcf-sr.c | 89 int i, j, n, nvcf; in main() local
90 char **vcf = hts_readlist(argv[optind], 1, &nvcf); in main()
96 for (i=0; i<nvcf; i++) in main()
135 for (i=0; i<nvcf; i++) in main()
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| H A D | test-bcf-sr.pl | 198 my $nvcf = 1 + int(rand(10));
199 for (my $i=0; $i<$nvcf; $i++)
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| /dports/biology/freebayes/freebayes-1.3.5/contrib/htslib/test/ |
| H A D | test-bcf-sr.c | 95 int i, j, n, nvcf; in main() local
96 char **vcf = hts_readlist(argv[optind], 1, &nvcf); in main()
106 for (i=0; i<nvcf; i++) in main()
145 for (i=0; i<nvcf; i++) in main()
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| H A D | test-bcf-sr.pl | 228 my $nvcf = 1 + int(rand(10));
229 for (my $i=0; $i<$nvcf; $i++)
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| /dports/biology/htslib/htslib-1.14/test/ |
| H A D | test-bcf-sr.c | 95 int i, j, n, nvcf; in main() local
96 char **vcf = hts_readlist(argv[optind], 1, &nvcf); in main()
106 for (i=0; i<nvcf; i++) in main()
145 for (i=0; i<nvcf; i++) in main()
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| H A D | test-bcf-sr.pl | 228 my $nvcf = 1 + int(rand(10));
229 for (my $i=0; $i<$nvcf; $i++)
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| /dports/biology/kallisto/kallisto-0.46.1/ext/htslib/ |
| H A D | bcf_sr_sort.c | 198 for (i=0; i<iv->nvar; i++) cnt += srt->var[iv->var[i]].nvcf; in pairing_score()
256 for (j=0; j<var->nvcf; j++) in push_vset()
282 for (k=0; k<var->nvcf; k++) in debug_vsets()
395 if ( var->vcf[var->nvcf-1] != ireader ) break; in bcf_sr_sort_set()
406 srt->var[ivar].nvcf = 0; in bcf_sr_sort_set()
418 var->nvcf++; in bcf_sr_sort_set()
419 hts_expand0(int*, var->nvcf, var->mvcf, var->vcf); in bcf_sr_sort_set()
421 var->vcf[var->nvcf-1] = ireader; in bcf_sr_sort_set()
422 var->rec[var->nvcf-1] = line; in bcf_sr_sort_set()
442 srt->grp[igrp].nvcf++; in bcf_sr_sort_set()
[all …]
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| H A D | bcf_sr_sort.h | 52 int nvcf, mvcf, *vcf; // the list of readers with the same variants member
62 int nvcf; // number of readers with the same variants member
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| /dports/biology/vt/vt-0.57721/lib/htslib/ |
| H A D | bcf_sr_sort.h | 52 int nvcf, mvcf, *vcf; // the list of readers with the same variants member
62 int nvcf; // number of readers with the same variants member
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| H A D | bcf_sr_sort.c | 198 for (i=0; i<iv->nvar; i++) cnt += srt->var[iv->var[i]].nvcf; in pairing_score()
256 for (j=0; j<var->nvcf; j++) in push_vset()
284 for (k=0; k<var->nvcf; k++) in debug_vsets()
416 if ( var->vcf[var->nvcf-1] != ireader ) break; in bcf_sr_sort_set()
427 srt->var[ivar].nvcf = 0; in bcf_sr_sort_set()
439 var->nvcf++; in bcf_sr_sort_set()
440 hts_expand0(int*, var->nvcf, var->mvcf, var->vcf); in bcf_sr_sort_set()
442 var->vcf[var->nvcf-1] = ireader; in bcf_sr_sort_set()
443 var->rec[var->nvcf-1] = line; in bcf_sr_sort_set()
463 srt->grp[igrp].nvcf++; in bcf_sr_sort_set()
[all …]
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| /dports/biology/bedtools/bedtools2-2.30.0/src/utils/htslib/ |
| H A D | bcf_sr_sort.h | 52 int nvcf, mvcf, *vcf; // the list of readers with the same variants member
62 int nvcf; // number of readers with the same variants member
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| H A D | bcf_sr_sort.c | 200 for (i=0; i<iv->nvar; i++) cnt += srt->var[iv->var[i]].nvcf; in pairing_score()
258 for (j=0; j<var->nvcf; j++) in push_vset()
286 for (k=0; k<var->nvcf; k++) in debug_vsets()
418 if ( var->vcf[var->nvcf-1] != ireader ) break; in bcf_sr_sort_set()
429 srt->var[ivar].nvcf = 0; in bcf_sr_sort_set()
441 var->nvcf++; in bcf_sr_sort_set()
442 hts_expand0(int*, var->nvcf, var->mvcf, var->vcf); in bcf_sr_sort_set()
444 var->vcf[var->nvcf-1] = ireader; in bcf_sr_sort_set()
445 var->rec[var->nvcf-1] = line; in bcf_sr_sort_set()
465 srt->grp[igrp].nvcf++; in bcf_sr_sort_set()
[all …]
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| /dports/biology/stacks/stacks-2.4/htslib/ |
| H A D | bcf_sr_sort.h | 52 int nvcf, mvcf, *vcf; // the list of readers with the same variants member
62 int nvcf; // number of readers with the same variants member
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| H A D | bcf_sr_sort.c | 198 for (i=0; i<iv->nvar; i++) cnt += srt->var[iv->var[i]].nvcf; in pairing_score()
256 for (j=0; j<var->nvcf; j++) in push_vset()
284 for (k=0; k<var->nvcf; k++) in debug_vsets()
416 if ( var->vcf[var->nvcf-1] != ireader ) break; in bcf_sr_sort_set()
427 srt->var[ivar].nvcf = 0; in bcf_sr_sort_set()
439 var->nvcf++; in bcf_sr_sort_set()
440 hts_expand0(int*, var->nvcf, var->mvcf, var->vcf); in bcf_sr_sort_set()
442 var->vcf[var->nvcf-1] = ireader; in bcf_sr_sort_set()
443 var->rec[var->nvcf-1] = line; in bcf_sr_sort_set()
463 srt->grp[igrp].nvcf++; in bcf_sr_sort_set()
[all …]
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| /dports/biology/freebayes/freebayes-1.3.5/contrib/htslib/ |
| H A D | bcf_sr_sort.c | 187 for (i=0; i<iv->nvar; i++) cnt += srt->var[iv->var[i]].nvcf; in pairing_score()
246 for (j=0; j<var->nvcf; j++) in push_vset()
275 for (k=0; k<var->nvcf; k++) in debug_vsets()
407 if ( var->vcf[var->nvcf-1] != ireader ) break; in bcf_sr_sort_set()
418 srt->var[ivar].nvcf = 0; in bcf_sr_sort_set()
430 var->nvcf++; in bcf_sr_sort_set()
431 hts_expand0(int*, var->nvcf, var->mvcf, var->vcf); in bcf_sr_sort_set()
433 var->vcf[var->nvcf-1] = ireader; in bcf_sr_sort_set()
434 var->rec[var->nvcf-1] = line; in bcf_sr_sort_set()
454 srt->grp[igrp].nvcf++; in bcf_sr_sort_set()
[all …]
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| H A D | bcf_sr_sort.h | 52 int nvcf, mvcf, *vcf; // the list of readers with the same variants member
62 int nvcf; // number of readers with the same variants member
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| /dports/biology/py-pysam/pysam-0.18.0/htslib/ |
| H A D | bcf_sr_sort.c | 187 for (i=0; i<iv->nvar; i++) cnt += srt->var[iv->var[i]].nvcf; in pairing_score()
246 for (j=0; j<var->nvcf; j++) in push_vset()
276 for (k=0; k<var->nvcf; k++) in debug_vsets()
429 if ( var->vcf[var->nvcf-1] != ireader ) break; in bcf_sr_sort_set()
440 srt->var[ivar].nvcf = 0; in bcf_sr_sort_set()
452 var->nvcf++; in bcf_sr_sort_set()
453 hts_expand0(int*, var->nvcf, var->mvcf, var->vcf); in bcf_sr_sort_set()
455 var->vcf[var->nvcf-1] = ireader; in bcf_sr_sort_set()
456 var->rec[var->nvcf-1] = line; in bcf_sr_sort_set()
476 srt->grp[igrp].nvcf++; in bcf_sr_sort_set()
[all …]
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| H A D | bcf_sr_sort.h | 52 int nvcf, mvcf, *vcf; // the list of readers with the same variants member
62 int nvcf; // number of readers with the same variants member
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| /dports/biology/htslib/htslib-1.14/ |
| H A D | bcf_sr_sort.c | 187 for (i=0; i<iv->nvar; i++) cnt += srt->var[iv->var[i]].nvcf; in pairing_score()
246 for (j=0; j<var->nvcf; j++) in push_vset()
276 for (k=0; k<var->nvcf; k++) in debug_vsets()
429 if ( var->vcf[var->nvcf-1] != ireader ) break; in bcf_sr_sort_set()
440 srt->var[ivar].nvcf = 0; in bcf_sr_sort_set()
452 var->nvcf++; in bcf_sr_sort_set()
453 hts_expand0(int*, var->nvcf, var->mvcf, var->vcf); in bcf_sr_sort_set()
455 var->vcf[var->nvcf-1] = ireader; in bcf_sr_sort_set()
456 var->rec[var->nvcf-1] = line; in bcf_sr_sort_set()
476 srt->grp[igrp].nvcf++; in bcf_sr_sort_set()
[all …]
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| H A D | bcf_sr_sort.h | 52 int nvcf, mvcf, *vcf; // the list of readers with the same variants member
62 int nvcf; // number of readers with the same variants member
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| /dports/science/agrum/aGrUM-29e540d8169268e8fe5d5c69bc4b2b1290f12320/apps/pyAgrum/notebooks/ |
| H A D | session_alarm.ipynb | 1515 …F1b1LJLkLUxzOPMzfh/7m77S/WZe+jmPZxwAI8QyhT8M+dArsRKfATgR6BJocqait7DO5K2Wc\nvcf/CDnnwLn6DEoraqbs3Gz…
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| /dports/chinese/rime-array/rime-array-d10f2f8b2aec7c7e736ace01e8a399e5ae5e7c3a/ |
| H A D | array30_phrases.dict.yaml | 99619 麻油 nvcf'
|